PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001864G0070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 189aa    MW: 19728.2 Da    PI: 8.0215
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001864G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-194896355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r+++ +grW+AeIrdp++    +r++lg++ taeeAa+a++ a++ ++g
  PH01001864G0070 48 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATAEEAARAYDVAARDIRG 96
                     9*******.**********954...4***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-3147104IPR001471AP2/ERF domain
PROSITE profilePS5103224.89547104IPR001471AP2/ERF domain
PfamPF008478.9E-144796IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2247105IPR016177DNA-binding domain
SMARTSM003801.8E-3347110IPR001471AP2/ERF domain
CDDcd000185.99E-2948106No hitNo description
PRINTSPR003672.8E-114859IPR001471AP2/ERF domain
PRINTSPR003672.8E-117086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MCGGAIIADF LQAGGRCPAT SSPDISANSL TGVEVTEKLP APGRKTAYRG IRRRPWGRWA  60
AEIRDPRKGA RVWLGTYATA EEAARAYDVA ARDIRGAKAK LNFPPAVRAP PAVATGAKKR  120
RRVAAEESSG SYSPSPQAAV AAGGGGVERL RECMSGLEAF LGPDDVAVGD ASEGDDVDPW  180
DAVDLMFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A3e-2048107666ATERF1
2gcc_A3e-2048107666ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118122KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1343487e-83AC134348.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0530H10, complete sequence.
GenBankAC1359297e-83AC135929.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0692D12, complete sequence.
GenBankAK1001847e-83AK100184.1 Oryza sativa Japonica Group cDNA clone:J023031H12, full insert sequence.
GenBankAK1116767e-83AK111676.1 Oryza sativa Japonica Group cDNA clone:J013155B14, full insert sequence.
GenBankAP0149617e-83AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126137e-83CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962330.16e-67PREDICTED: ethylene-responsive transcription factor ERF071-like
SwissprotP427363e-34RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLF8SLT73e-83F8SLT7_HORVD; AP2/EREBP-like protein
STRINGMLOC_64636.19e-83(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.17e-23ERF family protein